SWBIC Home SeqMake
SeqMake


HELP



      
             
             
             
             
             
             
             
             
          

Sequence Composition Options

Sequence for shuffling or sequence-based probability distribution

            
        
Input sequence file        


            
        
Or paste a sequence (do not include definition line)
          
         

Are you shuffling a sequence?
            
Yes
       
No

If Yes, enter a sequence above, give the following two parameters and then
 

            
Number of sequences to generate (1 – 10000)     

            
Sequence line length in FASTA output (10 – 999)

            
            

Otherwise, choose a sequence type and base or amino acid probability distribution

Protein Amino Acid Probability Distribution
begin with methionine uniform
user-defined

Swiss-Prot
DNA Base Probability Distribution
begin with ATG codon uniform
user-defined
RNA
   
Base Probability Distribution
   begin with AUG codon uniform
user-defined
Input Sequence
(probabilities calculated from sequence entered above)

User-defined Probability Percentages
A  | A  | ALA
C  | C  | ARG
G  | G  | ASN
T  | U  | ASP

   CYS

   GLN

   GLU

   GLY

   HIS

   ILE

   LEU

   LYS

   MET

   PHE

   PRO

   SER

   THR

   TRP

   TYR

   VAL


Sequence Number and Length Options

          
          
Number of sequences to generate (1 – 10000)     

          
          
Sequence line length in FASTA output (10 – 999)

          
          
Sequence Length (10 – 4000)

same as input sequence (applies only to input-sequence-based generation)
constant length length:
randomly distributed
 
from  

to
normally distributed mean:

 standard deviation: