Metabolic Pathway Databases & Related

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Biocatalysis/Biodegradation Database
[University of Minnesota] “Microbial biocatalytic reactions and biodegradation pathways primarily for xenobiotic, chemical compounds.”

[more info][12098]

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Biochemical Pathways
[ExPASy] A searchable index of biochemical pathways.

[more info][12593]

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[SRI International] The BioCyc Knowledge Library is the new name for EcoCyc and MetaCyc. It is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism, with the exception of the MetaCyc database, which is a reference source on metabolic pathways from many organisms.

[more info][12090]

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Biomolecular Interaction Network
The page describes BIND, which will span the complexity of interaction information gathered through experimental studies of biomolecular interactions. BIND contains interaction, molecular complex, and pathway records.

[more info][12400]

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Cell Signaling Networks Database
[National Institute of Health Sciences, Japan] CSNDB “is a data- and knowledge- base for signaling pathways of human cells. It compiles the information on biological molecules, sequences, structures, functions, and biological reactions which transfer the cellular signals.”

[more info][12096]

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Enzymology Database
[Argonne National Laboratories] The EMP database contains detailed information on a very large number of enzymes from over 17,000 articles. It can be searched by name, EC number, taxon, tissue, or organelle.

[more info][12113]

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Kyoto Encyclopedia of Genes and Genomes
[GenomeNet] “KEGG is an effort to computerize current knowledge of molecular and cellular biology in terms of the information pathways that consist of interacting molecules or genes and to provide links from the gene
catalogs produced by genome sequencing projects.”

[more info][12009]

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Links to Pathway and Other Databases
[GenomeNet] A comprehensive list of links to biological and biochemical databases. The types of databases include: metabolic pathways; enzymes, compounds, and elements; regulatory pathways; protein-protein interactions; nomenclature and classification; taxonomy; and complete genomes and analysis.

[more info][12086]

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Links to Pathway Databases
[Kyoto University] A list of links to databases of pathways of reactions & compounds in living cells.

[more info][12087]

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Main Metabolic Pathways on Internet
[Peter van Santen] A non-interactive diagram of the basic metabolic pathways.

[more info][12092]

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Metabolic Databases
[Yale University] The metabolic component of SoyBase, a soybean genetic database, contains reaction and pathway descriptions and diagrams for a number of basic metabolic pathways.

[more info][12600]

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Metabolic Pathways of Biochemistry
[Karl J. Miller] (George Washington University) This site is designed to graphically represent all major metabolic pathways, primarily those important to human biochemistry.

[more info][12601]

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Metabolism & Biocompounds Resources
[University of Nebraska, Lincoln] Links to metabolism, metabolic pathway and biocompound databases and information resources.

[more info][12097]

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Ortholog/Paralog Groups of Functional Units
[Institute for Chemical Research, Kyoto University] Conserved gene clusters in the KEGG metabolic and regulatory pathways.

[more info][12602]

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[NCGR] PathDB is a database of biochemical pathways and metabolism, and is able to store rich information about pathways, enzymes, reactions, transport steps, and biochemical compounds.

[more info][12099]

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[Cornell and Iowa State University] This database contains genomic and metabolic information for soybeans.

[more info][12088]

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SPAD: Signaling PAthway Database
[Kyushu University] An integrated database for genetic information and signal transduction systems.

[more info][12572]

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stke: Signal Transduction Knowledge Environment
[Science journal, Stanford University library] Web resource for biological (cellular) signal transduction, emphasizing articles, news, meetings, and links.

[more info][13718]

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[Argonne National Laboratories] “WIT is a www-based system to support the curation of function assignments made to genes and the development of metabolic models.”

[more info][12093]