Bioinformatics & Genomics
Genomic & DNA
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[SRI International] The BioCyc Knowledge Library is the new name for EcoCyc and MetaCyc. It is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism, with the exception of the MetaCyc database, which is a reference source on metabolic pathways from many organisms.
CGSC: E. coli Genetic Stock Center
[Yale University] A database of genetic information, including genotypes and reference information for the strains in the CGSC collection, gene names, properties, linkage map, gene product information, and information on specific mutations.
[Kazusa DNA Research Institute] The genome database for Synechocystis sp. strain PCC6803.
ECDC: E. coli Database Collection
[Univ. of Giessen] A site dedicated to the E. coli K-12 chromosome.
Genome Database (Saccharomyces)
[Stanford Univ.] A searchable database of the molecular biology and genetics of baker’s yeast.
Genome Project (E. coli)
[University of Wisconsin – Madison] Contains the completed sequence of the E. coli K-12 genome and several of the phages. Currently in the process of analyzing the data acquired.
Genome Project (Mycoplasma pneumoniae)
[Zentrum fur Molekulare Biologie der Universitat Heiderlberg] DNA sequence of the complete Mycoplasma pneumoniae genome.
[The Organelle Genome Database] A taxonomically broad organelle genome database that organizes and integrates diverse data related to organelles.
HIDB: Haemophilus influenzae Rd Genome Database
[The Institute for Genomic Research] The latest sequence data and related annotation for the Haemophilus influenzae Rd genome.
HIV Sequence Database
[Los Alamos National Lab] This database currently contains nucleotide sequences that have appeared in the current and all previous annual editions of Human Retroviruses and AIDS in both GenBank and EMBL formats, as well as protein translations of the coding regions.
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HPV Sequence Database
[Los Alamos National Laboratory] The Human Papillomaviruses Database collects, curates, analyzes, and publishes genetic sequences of papillomaviruses and related cellular proteins.
Influenza Sequence Database
[Los Alamos National Laboratory] A curated database of nucleotide and amino acid sequences intended to provide an easy sequence deposit and retrieval capabilities to the analysis of hemagglutinin and neuraminidase sequences.
MGDB: Mycoplasma genitalium Genome Database
[TIGR] The first genome of a gram positive-like bacterium to be completed.
[EMBL-EBI] Provides a�comprehensive and integrated DNA database on mitochondrial genes both from different organisms (humans, animals, plants and microbes) and from intraspecies variants and mutants.
MJDB: Methanococcus jannaschii Genome Database
[The Institute for Genomic Research] The latest sequence data and related annotation for the genome.
NRSub: Non-Redundant B. subtilis database
[Pole Bio-Informatique Lyonnais] A database of sequences and information on the completed Bacillus subtilis genome.
[Proteome, Inc.] This site allows access to proteome databases for yeast (YPD), S. pombe (PombePD), and C. elegans (WormPD). These databases contain genomic sequences, functional genomic, and other comprehensive organism information.
Sexually Transmitted Disease Sequence Databases
[Los Alamos National Laboratory] This site provides links to sexually transmitted disease sequence databases and bioinformatics sequence analysis tools.
[Institut Pasteur] Database of DNA sequences, gene functions, and proteins from Bacillus subtilis.
TIGR Microbial Database
[The Institute for Genomic Research] A listing of microbial genomes that have been published or are in the process of being sequenced.
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