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Bioinformatics & Genomics


Genomic & DNA


Eukaryotic (Other)



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[SRI International] The BioCyc Knowledge Library is the new name for EcoCyc and MetaCyc. It is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism, with the exception of the MetaCyc database, which is a reference source on metabolic pathways from many organisms.

[more info][12090]

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CGSC: E. coli Genetic Stock Center
[Yale University] A database of genetic information, including genotypes and reference information for the strains in the CGSC collection, gene names, properties, linkage map, gene product information, and information on specific mutations.

[more info][12608]

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[Kazusa DNA Research Institute] The genome database for Synechocystis sp. strain PCC6803.

[more info][12008]

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ECDC: E. coli Database Collection
[Univ. of Giessen] A site dedicated to the E. coli K-12 chromosome.

[more info][10981]

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Genome Database (Saccharomyces)
[Stanford Univ.] A searchable database of the molecular biology and genetics of baker’s yeast.

[more info][11022]

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Genome Project (E. coli)
[University of Wisconsin – Madison] Contains the completed sequence of the E. coli K-12 genome and several of the phages. Currently in the process of analyzing the data acquired.

[more info][12610]

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Genome Project (Mycoplasma pneumoniae)
[Zentrum fur Molekulare Biologie der Universitat Heiderlberg] DNA sequence of the complete Mycoplasma pneumoniae genome.

[more info][11016]

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[The Organelle Genome Database] A taxonomically broad organelle genome database that organizes and integrates diverse data related to organelles.

[more info][10992]

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HIDB: Haemophilus influenzae Rd Genome Database
[The Institute for Genomic Research] The latest sequence data and related annotation for the Haemophilus influenzae Rd genome.

[more info][10995]

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HIV Sequence Database
[Los Alamos National Lab] This database currently contains nucleotide sequences that have appeared in the current and all previous annual editions of Human Retroviruses and AIDS in both GenBank and EMBL formats, as well as protein translations of the coding regions.

[more info][10998]

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HPV Sequence Database
[Los Alamos National Laboratory] The Human Papillomaviruses Database collects, curates, analyzes, and publishes genetic sequences of papillomaviruses and related cellular proteins.

[more info][10999]

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Influenza Sequence Database
[Los Alamos National Laboratory] A curated database of nucleotide and amino acid sequences intended to provide an easy sequence deposit and retrieval capabilities to the analysis of hemagglutinin and neuraminidase sequences.

[more info][12627]

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MGDB: Mycoplasma genitalium Genome Database
[TIGR] The first genome of a gram positive-like bacterium to be completed.

[more info][11009]

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[EMBL-EBI] Provides a�comprehensive and integrated DNA database on mitochondrial genes both from different organisms (humans, animals, plants and microbes) and from intraspecies variants and mutants.

[more info][11011]

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MJDB: Methanococcus jannaschii Genome Database
[The Institute for Genomic Research] The latest sequence data and related annotation for the genome.

[more info][11013]

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NRSub: Non-Redundant B. subtilis database
[Pole Bio-Informatique Lyonnais] A database of sequences and information on the completed Bacillus subtilis genome.

[more info][12621]

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Proteome Databases
[Proteome, Inc.] This site allows access to proteome databases for yeast (YPD), S. pombe (PombePD), and C. elegans (WormPD). These databases contain genomic sequences, functional genomic, and other comprehensive organism information.

[more info][12697]

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Sexually Transmitted Disease Sequence Databases
[Los Alamos National Laboratory] This site provides links to sexually transmitted disease sequence databases and bioinformatics sequence analysis tools.

[more info][12464]

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[Institut Pasteur] Database of DNA sequences, gene functions, and proteins from Bacillus subtilis.

[more info][12623]

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TIGR Microbial Database
[The Institute for Genomic Research] A listing of microbial genomes that have been published or are in the process of being sequenced.

[more info][11028]

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