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Bioinformatics & Genomics

Molecular Modeling & Visualization


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Biochemistry in 3D
[Worth Publishers] “Biochemistry in 3D is a collection of interactive tutorials using 3D structures to teach concepts in Biochemistry. It is designed to accompany Lehninger Principles of Biochemistry 3rd edition.”

[more info][12333]

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BioMolecules in the Classroom
[University of Massachusetts] Information and tutorials on how to use RasMol and Chime, and tutorials that use RasMol and Chime to teach biomolecules.

[more info][12331]

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[Univ. of Massachusetts, Department of Microbiology] This program is used to view molecular structures on Netscape.

[more info][11293]

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Chime – Great Sites
[MDL] A chemical structure visualization plug-in for Windows and Macintosh.

[more info][12037]

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Chime Downloadable Resources
[University of Massachusetts] [Annotation pending]
[more info][12329]

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Chime: How to Use It.
[University of Massachusetts] A tutorial explaining how to use the Chime molecular visualization browser plug-in.

[more info][12328]

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Computers in Chemistry
[Cabrillo College] A set of molecular visualization tutorials, information, and problem sets that use Chime.

[more info][12355]

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DNA-RNA Structure Tutorials
[Tulane] A collection of tutorials on DNA and RNA using Chime.

[more info][11911]

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Exploring 3D Molecules
[University of Massachusetts] This is a workshop titled “Exploring 3D molecular structure with computer visualization using MDLI’s Chemscape Chime & Protein Explorer,” given by Eric Martz.

[more info][12334]

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Noncovalent Bond Finder
[University of Massachusetts] [Annotation pending]

[more info][12337]

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Online Macromolecular Museum
[California Lutheran College] The OMM is a site for the display and study of macromolecules. It’s “exhibits” are interactive tutorials on individual molecules in which hypertextual explanations of important biochemical features are linked to illustrative renderings of the molecule at hand.

[more info][11907]

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RasMol, Chime & Protein Explorer
[University of Massachusetts] [Annotation pending]

[more info][12322]

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[Birkbeck College – University of London] (1999) Uses Chime to explore the mechanism of “the world’s most abundant enzyme.”

[more info][11908]

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World Index of Molecular Visualization Resources
This is a visitor-maintained website. Visitors may submit website URL’s with descriptions and cross-indexing terms. Categories include Biochemistry and inorganic chemistry tutorials, how to create Chime tutorials, resources for structural data files, and sources for visualization and modeling software.

[more info][12060]