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[EMBL] The Biocatalog is a software directory of general interest
in molecular biology and genetics. The full database is downloadable (text file).

[more info][12399]

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BioMed CAChe
[CAChe Group] BioMedCAChe is the new computer-aided chemistry software package designed specifically for bio- and medicinal chemists. The package aids researchers in discovering structure-activity relationships, optimizing leads by maximizing activity, and improving the prediction of bioavailability.

[more info][12733]

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[The Bioperl Project] Software package for computational molecular biology.

[more info][11150]

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[Aalborg University] This Blocking Gibbs Sampling for Pedigree (Linkage) Analysis in Very Large Pedigrees program is for linkage analysis of large complex pedigrees.

[more info][11151]

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[Institut National de la Recherche Agronomique] A program for use in plasmid cloning to quickly find in frame deletions, sub-cloning, and frameshift strategies.

[more info][11152]

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[Compugen] An algorithm for searching protein databases with DNA queries, based on Smith-Waterman. FramePlus independently and simultaneously models frame shifts and codon gaps.

[more info][12064]

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[Caltech] This program runs simulation programs of different neural systems.

[more info][11109]

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JamBW 1.1: Java Based Molecular Biologist’s Workbench
[EMBL] A collection of programs designed to exploit the most common bioinformatic operations that a molecular biologist currently has, including manipulation and analysis of DNA sequences.

[more info][11167]

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JaMBW: Java Based Molecular Biologist’s Workbench
[EMBL-Heidelberg] A set of tools for free access to the the most common bioinformatic operations that a molecular biologist currently has.

[more info][11168]

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The Microbiology Network
Molecular Biology and Biotechnology File Archive.
These files include standard shareware
programs of interest to the microbiologist,
programs designed by individual investigators,
text files in specialized interest, and
demonstration programs supplied by vendors.

[more info][11248]

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pDRAW32 DNA analysis software
[AcaClone Software] A free, feature-rich, DNA software application. Capabilities include annotation, cloning, sequence editing, enzyme selection, graphical output, and more. According to the author, “Actually pDRAW32 is not freeware – rather it is “beerware.” This means that if you like the program you are encouraged to buy me a beer if you should meet me at a scientific meeting. You are mostly at risk of that if you attend conferences on yeast genetics.”

[more info][12076]

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Software Tools
[TIGR] A list of links to very useful molecular biology and bioinformatics-related freeware. The list includes programs for DNA sequencing and sequence analysis, genomic searches, and microarray image processing.

[more info][12051]