Computational & Web Resources
Cell & Molecular Biology
Genetics & Evolution
Life Sciences (Other)
|Opens resource in a 2nd browser window.|
Mircobiology Software. 101science.com is a science web directory, tutor, and research learning center.
[Legend Microsystems, Inc.] This site for biochemists provides access to the AminoXpress software and the companion internet resources at AminoXpress.com. The AminoXpress software is a 12 module multifunction package that allows users to perform analyses from calculation of molecular weight to prediction of mass distribution of a combinatorial library. AminoXpress.com is set up for user contributions of general information, job postings, resumes, and more.
[CAChe Group] BioMedCAChe is the new computer-aided chemistry software package designed specifically for bio- and medicinal chemists. The package aids researchers in discovering structure-activity relationships, optimizing leads by maximizing activity, and improving the prediction of bioavailability.
[Protein Chemistry Laboratory, Univ. of Aarhus] Control and collection software for the BioStat B fermentor.
[Daresbury Laboratory] The CCP4 Program Suite is an integrated set of programs for protein crystallography. It is distributed in source form (mostly Fortran), supported for VMS and various Unix platforms.
[Bo Bergmann] Calculates an amino acid distribution by modelling the HPCL-chromatograms by using different density functions.
LigBuilder v1.0 Software
[Institute of Physical Chemistry, Peking University] LigBuilder is a multi-purpose program written for structure-based drug design. Based on the 3D structure of the target protein, it can automatically build ligand molecules within the binding pocket and subsequently screen them.
Linux for Chemists
A virtual library of Linux software links in the areas of chemistry, biochemistry, computational biology and bioinformatics.
[Univ. of York] MacStripe will explore potential alpha-helical coiled coils in the sequence of a protein.
[S. Hubbard & J. Thornton, UMIST] A stand alone program that calculates the accessible area of a molecule from a PDB format file. It can calculate the atomic and residual accessiblities for both proteins and nucleic acids.
Top of Page
Peakmatcher Download Site
[University of Minnesota] Peakmatcher is an Excel macro that automates the creation
of a binary (1/0) table from semi-automated
fluorescence-based AFLP. It can utilize text output from ABI
PRISM Genotyper software.
[Universit�t T�bingen] A LaTeX package for shading membrane protein topology plots.
[ACRM] Torsion is a program for calculating phi, psi, omega, and C-alpha pseudo-torsions.
World Index of Molecular Visualization Resources
This is a visitor-maintained website. Visitors may submit website URL’s with descriptions and cross-indexing terms. Categories include Biochemistry and inorganic chemistry tutorials, how to create Chime tutorials, resources for structural data files, and sources for visualization and modeling software.