Bioinformatics & Genomics
Companies, Publishers, & Books
Compendiums & Lists of Resource Links
Compounds & Enzymes
Educational & Information Resources
Genomics & DNA Sequence Analysis
Hidden Markov Models
Major Sites & Organizations
Metabolic Pathway Databases & Related
Molecular Modeling & Visualization
Motif, Domain, Profile, Pattern, & Repeat Searches
Multiple Alignment & Phylogeny
Protein & Nucleic Acid Search Servers
Protein Analysis from Sequence
Sites with Multiple or Integrated Tools
Software Catalogues, Lists, & Downloads
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Analytical Biostatistics Section
[NIH] The ABS offers downloadable software and servers in the areas of sequence analysis, protein structure prediction, ligand binding, and gene expression.
ARS Genome Database Resource
[USDA-ARS Center for Agricultural Bioinformatics, Cornell University ] A site with plant genome databases and information. Included are plant genes, chromosome maps, DNA fingerprints, beneficial traits, and crop varities that possess query traits.
Art's Biotechnology Resource
This is a well-organized site of annotated links in the areas of molecular biology, bioinformatics, biochemistry, and biophysics.
[Institut Pasteur] This search engine provides several features for searches including Boolean operators, specific phrases, language settings, case sensitivity, and the amount of detail to display in the descriptions of the retrieved information.
The Biochemist's Toolbox
A large compendium of links to databases of many kinds, sequence analysis programs, journals, software, and more.
[National University of Singapore] A comprehensive site providing information and multiple bioinformatic related analysis tools in areas such as phylogenetics, lab management, and metabolic pathway visualization.
Bioinformatics Resources for Easy Access
This is a searchable site of annotated links to many resources in Bioinformatics.
BioMolecules in the Classroom
[University of Massachusetts] Information and tutorials on how to use RasMol and Chime, and tutorials that use RasMol and Chime to teach biomolecules.
[Celera] Celera Corporations scientific home page that provides Celera and related biotechnology news and password access to the Celera Discovery System of genomic databases and analysis tools.
Centre for Molecular and Biomolecular Informatics
[Univ. of Nijmegen] Information on multiple bioinformatics related services, research, and program courses at this center.
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Chime - Great Sites
[MDL] A chemical structure visualization plug-in for Windows and Macintosh.
CMS Molecular Biology Resource
[Univ. of California] "A compendium of electronic and Internet-accessible tools and resources for Molecular Biology, Biotechnology, Molecular Evolution, Biochemistry, and Biomolecular Modeling."
CMS Molecular Biology Resource
[San Diego Supercomputer Center] A compendium of electronic and Internet-accessible tools and resources for Molecular Biology, Biotechnology, Molecular Evolution, Biochemistry, and Biomolecular Moldeling.
Computational Biology and Informatics Laboratory
[University of Pennsylvania] Multiple bioinformatics related tools and databases. The site also includes information about related degree programs and UPenn.
Computational Biology and its Research Areas
Information about computational biology.
Computers in Chemistry
[Cabrillo College] A set of molecular visualization tutorials, information, and problem sets that use Chime.
CUBIC: Columbia University Bioinformatics Center
CUBIC contains a wealth of services, databases, articles and their data sets, and annotated bioinformatics links. It is the current home of PredictProtein and other services for protein analysis.
A well-organized, highly navigable site with numerous annotated links in the areas of databases (including the human genome), sequence analysis, and documentation.
DOE's Joint Genome Institute
[U.S. DOE and University of California] The JGI is one of the centers involved in the international effort to fully sequence the human genome. It is sequencing chromosomes 5, 16 and 19. JGI is also involved in other projects such as microbial, comparative, computational, and functional genomics.
EGP-Related Research in Biostatistics/Bioinformatics
[Environmental Genome Project] This project develops computational ways to analyze gene-environment interactions and databases for macromolecular cellular components.
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[European Molecular Biology Network - Swiss Node] This site provides DNA and protein sequence analysis tools, sequence alignment tools, and other bioinformatics tools. It also provides numerous links to related information, courses, universities, and documentation.
[Swiss Institute of Bioinformatics] The EXPASy "server is dedicated to the analysis of protein sequences and structures as well as 2-D PAGE." This site contains links to databases, tools and software packages, education and services, documentation, lists of links to molecular biology resources, links to major molecular biology servers, and local links.
[Nature Technology Corporation] A comprehensive site with links to information and resources in biotechnology and bioinformatics. The large number of resource categories include academic sites, conferences, employment, genomics, proteins, grants & contracts, intellectual property, methods & protocols, software, and venture capital.
Gene Finding Programs
[University of Tokyo] A list of Gene Finding programs.
[Incogen] "The following is a list of genome centers throughout the world working on a variety of organisms in the areas of BAC Resource, DNA sequencing, Physical Mapping, and
[Cambridge Healthtech Institute] "Genomics knowledge and insights are expanding exponentially.
Genomics Glossaries help you keep abreast of evolving and interdisciplinary vocabulary." This site has a large number of glossaries ranging from introductory to advanced in genomics and related areas.
[Incogen] A list of links to sites in the following catagories: databases, DNA analysis, protein analysis, sequencing projects, mapping and linkage, genome centers, culture collections, companies, biological resources and information, and FAQS.
Human Genome Project Information
[U.S. DOE] Explore this site for information about the U.S. and worldwide Human Genome Project.
Human Genome Research
[U.S. Department of Energy] The DOE web site for the Human Genome Project. It contains information on the HGP, funded projects, publications, molecular genetics primers, and links to other resources.
Human Genome Sequencing Center
[Baylor College of Medicine] One of the six major sequencing centers in the U.S. involved in the Human Genome Project. The center is also involved in sequencing other organisms and maintains the BCM Search Launcher.
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Institute of Molecular Biotechnology Jena
A major European biotechnology research center with groups doing research in biochemistry, molecular biology, biocomputing, genome analysis, structural and evolutionary biology, and molecular biophysics.
Internet Resources-Genetics and Molecular Biology
[Rochefeller University] Alphabetized links to genetics and molecular biology resources.
A comprehensive site with a compilation of information and tools for the biological scientist and laboratory. The site sections include products, protocols, tools & tables, literature, news, and a lab manager tool for managing personalized data.
Links to Pathway and Other Databases
[GenomeNet] A comprehensive list of links to biological and biochemical databases. The types of databases include: metabolic pathways; enzymes, compounds, and elements; regulatory pathways; protein-protein interactions; nomenclature and classification; taxonomy; and complete genomes and analysis.
Links to Pathway Databases
[Kyoto University] A list of links to databases of pathways of reactions & compounds in living cells.
Metabolism & Biocompounds Resources
[University of Nebraska, Lincoln] Links to metabolism, metabolic pathway and biocompound databases and information resources.
Molecular Biology Gateway
[Horizon Scientific Press] A collection of links including journals, Internet for the molecular biologist, software sites, newsgroups, genomes and databases, institutes and organizations, and commercial sites.
Molecular Biology Resource List
A large, well-organized collection of annotated links in the areas of sequence databases and analysis, structure databases, resource centers, and documentaion. The site also includes a bioinformatics glossary.
Molecular Docking Web
[Home page of Dr. Garrett M. Morris] Ligand-protein docking, with access to AutoDock program, important for drug design. Many links for ligands, protein structure, drug design, computational chemistry, bioinformatics.
Multiple Alignment Resource Page
[VSNS BioComputing Division - University of Bielefeld] A calculation of Multiple Alignment resources on the World Wide Web.
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NMSU Department of Biology Links
A collection of links compiled by the New Mexico State University Department of Biology. Categories include biodiversity, evolutionary biology, and molecular biology.
Pedro's BioMolecular Research Tools
[Iowa State University] (Pedro Coutino) "A collection of WWW links to information and services useful to molecular biologists." Links are annotated and rated. The site has not been modified since 3/15/96.
Pharmaceutical Online Storefronts
The Southwest Biotechnology and Informatics Center (SWBIC) provides a single-point access to a vast store of widely distributed
biotechnology information as well as developing new educational and bioinformatics services.
PHYLIP Home Page
[University of Washington] (PHYLogeny Inference Package) "PHYLIP is a package of programs for inferring phylogenies. Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites, distance matrices, and 0/1 discrete characters."
[University of California at Berkeley] A listing of Phylogenetic resources including societies, publications, databases, and software..
[University of Washington] A list of over 100 phylogeny software packages.
Protein Modelling Software
[National University of Singapore] Well-annotated links to software for protein modelling programs and their online manuals.
[ExPASy] An extensive annotated list of links to tools that provide analysis of protein sequences and structures.
Secondary Structure Prediction Methods and Links
[Imperial Cancer Research Fund] A guide on this subject, including descriptions of automaticd methods, manual intervention, strategies, references, and links.
The Southwest Biotechnology and Informatics Center (SWBIC)
SWBIC provides a single-point access to a vast store of widely distributed biotechnology information as well as developing new educational and bioinformatics services. You are in SWBIC's Internet Resources Search.
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Stanford Genomic Resources
[Stanford University] This site provides links to various systematic analysis projects, resources, laboratories, and departments at Stanford University. It is maintained by the Saccharomyces Genome Database within the School of Medicine.
stke: Signal Transduction Knowledge Environment
[Science journal, Stanford University library] Web resource for biological (cellular) signal transduction, emphasizing articles, news, meetings, and links.
[Dunbrack Group, Fox Chase Cancer Center] A large list of annotated links to resources in 3-D, structural biology, sequence databases and analysis tools, protein information, home pages of other research groups, and more.
Structural Biology Industrial Platform
The platform is comprised of fifteen companies, including representatives of some of Europe's largest pharmaceutical industries, as well as the European Commission and Research Centres in Europe, in efforts to promote structural biology research, training, and development.
Tools for Multiple Alignments
[Pôle Bio-Informatique Lyonnais] A list of pointers to information sources useful for multiple alignment of homologous sequences.
UK Human Genome Mapping Project Resource Center
[HGMP] "The UK Human Genome Mapping Project Resource Centre (HGMP-RC) provides access to leading-edge tools for research in the fields of genomics, genetics, and functional genomics."