Programs Integrated with Web Sites
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Cornell Theory Center
[Advance Cluster Computing Consortium] A high-performance computing and interdisciplinary research center. This site provides information about the center, resources like software and training, and research information.
[Columbia University] This tool is designed to facilitate the study of macromolecular function by mapping a number of structural, chemical, and biological properties onto various representations of molecular structure (molecular surfaces, wire frame, CPK spheres, or backbone tracing ribbons).
See in 3-D
[NCBI] (Cn3D) “Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI’s Entrez retrieval service.”
STING: Sequence To and withIN Graphics
[EMBRAPA/CENARGEN] A tool for the simultaneous display of information about macromolecular structure and sequence. Special attention is given to MacroMolecular INTERFACE analysis.
STING Server and Software
[Weizmann Institute] “STING is a WWW tool for the simultaneous display of information about macromolecular structure (in STING’s Graphics Frame) and sequence (in STING’s Sequence Frame). Special attention is given to MacroMolecular INTERFACE analysis.”
[Glaxo Wellcome Experimental Research] An automated protein modelling server.
[ExPASy] Provides an interface allowing analysis of several proteins at the same time by superimposing them in order to deduce structural alignments and compare their active sites or any other relevant parts.
Swiss-PdbViewer 3.5 Review
[BioMedNet] A review of the Swiss-PdbViewer molecular display program.
Tutorial For Deep View (Swiss-PdbViewer)
[University of Southern Maine] This tutorial provides an introduction to macromolecular modeling with
Deep View (formerly called Swiss-PdbViewer), including review of many basic concepts in protein structure.